Scaffold Ga0209337_1031429

Overview

Basic Information

• Taxon OID: 3300025168
• Scaffold ID: Ga0209337_1031429
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-53 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2939
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (55.56%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 49.5666
  • Long. (^o): -138.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001839	Metagenome	628	Y
F004990	Metagenome	416	Y
F008915	Metagenome / Metatranscriptome	326	Y
F011253	Metagenome	293	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209337_10314294	F008915	GAG	MENNAITLDLYEMQSAAHLGILRCLESEKYQEKWGYNYKGSLNDQMAKSISGAMGEVALAKFLKIKFEYHCNVGGVPDLIFKDLRLQIRTQIPKNNNSLIIRPKAKPNEFYILVIDEAPNFKILGFVNSTYVLGQDKFKTDFGLARPPCYSIPPDKLTPINLLKDSSWN
Ga0209337_10314295	F004990	GGA	MYGDPKKPCCVCGKGADLREHTKYFCCDHYAINILGKTMEQIEKELGKNNEKIGSS
Ga0209337_10314297	F001839	AGGA	LKYFEKIDKDLLNNRALNSHEKLIYIICKSFENAPNKCRISHKYLMIRTGIKTKATLIRCLDRLTMFGMLARKQIDNGTCHYVFDKPTMQEYILHNTNKRRKISLSKNRHNRNLNAALSSPNVINMGKVIK
Ga0209337_10314298	F011253	N/A	LAGGVPKLKDRSLEIQKIIKRLVKNKSIPYANAVNKIKKDRKGYYQHKEIKNKQKNLSSDRFQQYLKTIQEEDDTR