Scaffold Ga0209337_1023778

Overview

Basic Information

• Taxon OID: 3300025168
• Scaffold ID: Ga0209337_1023778
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-53 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3513
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (10.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 49.5666
  • Long. (^o): -138.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009300	Metagenome	320	Y
F014804	Metagenome	260	Y
F018080	Metagenome	237	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209337_10237783	F009300	N/A	MIKWKKTTYPSTFIKLSDELAKVRSMLSADVYNKNTEKYRGKQEHSISQLGIFAELIARHLMENNNGIKYKAALLLEERPVVEADIIMQGIGEMNYIDVKGVRSGGNTLRVNFKAHNNPKKKITHYLFIQPLNALYARFCWFTHEQVSEWTVVMSTYTECYELEIPKNN
Ga0209337_10237787	F018080	N/A	MEYLDIEIFNHFLKAYTYIIWNKKHLLGEIVEDDILKLLDEIQLIDFYHFDKTKFKVEKSKVEKYINRDDK
Ga0209337_10237788	F014804	GAG	MNDDWIDNILDGEPSGITDTQWLIIESNIDQTSFTERMKSNILGRINDLTELEAEGIITKIYENRYEKDTRKQWEKMCKDGVFGHRDF