Scaffold Ga0209337_1023101

Overview

Basic Information

• Taxon OID: 3300025168
• Scaffold ID: Ga0209337_1023101
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-53 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3577
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 49.5666
  • Long. (^o): -138.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007003	Metagenome / Metatranscriptome	360	Y
F040325	Metagenome / Metatranscriptome	162	Y
F056888	Metagenome / Metatranscriptome	137	N
F072433	Metagenome / Metatranscriptome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209337_10231012	F040325	N/A	MARRKIGNSHTTICVSWEDKELFRKFASFVKKTRTGNLYESDAVLFSKMLNHFKENNTIGEVSNTTYPSKT
Ga0209337_10231013	F007003	N/A	MIHYFTKNIDQKKYNDIIQRIIMINGHDGTSNSGYKAWQNFEENWTLNIIPVTDQEDFKVYYKHLNVETSDGIAWGVTGVKVIYMFVNDIKNPFIIRQNIMPLGHELLHAIYQDAVGTSHITRRHDAPEGKANTRGAAATVIVHDNWYGTKKTIKIWIRWSMIWLPITIPFIPVKEAKKWYPI
Ga0209337_10231016	F056888	N/A	MNVSEVLDIKGSHENSQKLVAGDKITIQGFKIKNVDEVGAEVAEISTTEGLRHSFGKTVIGQAKSDYWKDVVAKCVDKDAADGLDAYVVEREAEKTGRMMLCLSMFPPKN
Ga0209337_10231019	F072433	N/A	LFSKKIEINLDKKDDIIHLEPISDIHIGHVGFDEDLYKKRIKAICKDKNRYTFFGGDALDAITTYDKRFNPDMSIEHD