Scaffold Ga0209337_1020903

Overview

Basic Information

• Taxon OID: 3300025168
• Scaffold ID: Ga0209337_1020903
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-53 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3815
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales → Synechococcaceae → Synechococcus → unclassified Synechococcus → Synechococcus sp. WH 8016 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 49.5666
  • Long. (^o): -138.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F039871	Metagenome / Metatranscriptome	163	Y
F049292	Metagenome	147	Y
F055275	Metagenome / Metatranscriptome	139	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209337_10209031	F049292	N/A	MYFVVGPVLALLISLKFTQQQQAKHKLEYEALVAKVELLENRSAETETTILKNVMSTVMPIAKAVNKLNQEVGL
Ga0209337_10209032	F039871	AGTAGG	VRIDLRKFFEAYEGSPHQLAAIDQLADGIPDELLDKFSDWVVCFEVDGEVQPLVEYCAKGYIMKEPWMYT
Ga0209337_10209035	F055275	N/A	MEGTEITFTMNERSVRALHSAVVFTLEKWAGQGDLDQECLLGIKPALQGCVFEFDFNRAE