Scaffold Ga0209337_1017054

Overview

Basic Information

• Taxon OID: 3300025168
• Scaffold ID: Ga0209337_1017054
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-53 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4347
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (27.27%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 49.5666
  • Long. (^o): -138.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F039871	Metagenome / Metatranscriptome	163	Y
F049292	Metagenome	147	Y
F055275	Metagenome / Metatranscriptome	139	Y
F079342	Metagenome	116	Y
F086306	Metagenome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209337_101705410	F086306	N/A	MIEPFISLIVAVGTGFAVLTSRIYSKIGHLDSRVDGIELRIVQDFVSKNDLQVALDRMENHMTRIEDKLDDMANNNKCKG
Ga0209337_10170544	F055275	N/A	MEQTEITFTMNERSVRALHSAVVFTLEKWAGQGELDQECLLGIKPALQGCVFEFDFNRAE
Ga0209337_10170545	F079342	GGAG	MTNIQVMSLKNARRNMARARKELELARINDTHYRGVEYTPISSTNETHGTFVYRGRTYTK
Ga0209337_10170547	F039871	AGTAGG	MRIDLRKFFEAYEGSPHQLAAVDQLAEGIPDELLDKFSDWVMCFEVDGEVQPLIEHCHKGYRMKEPWQYT
Ga0209337_10170548	F049292	N/A	MLGYVIAGPIAAVLVSLKLTDKRFKTHQQEYKALVAKVELLENRNEAVDKEMLQKIMTTVMPIAKAVNKLNQEVGL