Scaffold Ga0209337

Basic Information
Taxon OID	3300025168 Open in IMG/M
Scaffold ID	Ga0209337_1014501 Open in IMG/M
Source Dataset Name	Marine viral communities from the Pacific Ocean - LP-53 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300025168 Open in IMG/M

Scaffold ID

Ga0209337_1014501 Open in IMG/M

Source Dataset Name

Marine viral communities from the Pacific Ocean - LP-53 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	4804
Total Scaffold Genes	12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	10 (83.33%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (100.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

4804

Total Scaffold Genes

12 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

10 (83.33%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (100.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Taxonomy

All Organisms → Viruses → Predicted Viral

(Source: DeepVirFinder)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	49.5666	Long. (^o)	-138.6666	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Pacific Ocean

Coordinates

Lat. (^o)

49.5666

Long. (^o)

-138.6666

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000245	Metagenome / Metatranscriptome	1468	Y
F004439	Metagenome	438	Y
F005685	Metagenome / Metatranscriptome	393	Y
F011337	Metagenome	292	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209337_10145012	F004439	GGAG	MKTFKTYLKERLERGTSLSDLLFLPRIGYYDQLMIPISSSMYKRIWPDTLRATVFHTTDGKGIKSISRMEGQKKQISAFFSMMSRYMDVGVATQGGVHAVLEMDADVLLSAKGDVMSHLDKVGRRWTSISDLKETSRYTKFTKVETDLQKMFDPLVEKYLKRGEFQDNATIWQLWSMAKRKVDGKTMRLIIKDYIDGMEKVIKKNIDTFSDAMLSYAKKRSTDYSWDEQIVNNIKVKTAHFFKLKLLRGENSLLPEQQELIEFAESEGWKVKMWDAPIELEVYTRQVAAKELGKPKPTKPAKRSISY
Ga0209337_10145015	F011337	AGGA	MLRFKQYIAEIGVNPFKIAGKPAWTESLSTMLFDLPRAGIKDIKIPLSPAIMRRIWPKPVRTTVFHLTDYNGLGKLKKMQGGKRSVSAFFNIEPIVIETGIKSEGGYVVEMDADILVASQDDISSQPDKTGRRWVTLSSLMNTPTDPDPGLGGGAKLKGMEKDISGMLVDIVTKHSDITPLPNINKAWNYLGKSTGGKEKSLIIKDYIDGMEKTMKKHSKVLGSLLTDYTKKRIQEPDPDSGDKPMWDELVVNNFKIKKVHIGPEFGPDWEDDDDIDGFSFELYQDTGDIADYIYRTVSRIKL
Ga0209337_10145017	F005685	GAGG	MKKFNEYSSFEDRILATLKKTPCDLMTLSHKLKEDIMPVSSMLEHLKVYDKVEMFKEKWQIKRMKKK
Ga0209337_10145018	F000245	AGAAG	MKTFKEYRLDKKLDKIVHDEIIRRKFAKFPVNATDDIKMRMKPNKPAFKFPTPTGSMMIHVYLRKMAPSKGQPKGVMAFNYQLEDK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209337_1014501

Overview

Ecosystem & Geography

Associated Families

Sequences