Scaffold Ga0209337_1013671

Overview

Basic Information

• Taxon OID: 3300025168
• Scaffold ID: Ga0209337_1013671
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-53 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4986
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (91.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 49.5666
  • Long. (^o): -138.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006383	Metagenome	374	Y
F021674	Metagenome	218	Y
F069451	Metagenome / Metatranscriptome	124	N
F071759	Metagenome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209337_101367112	F071759	GAG	MLLNKKQKKLLENTEEEARAWVKSSSKYCFEIDIEQELRTIGQENIISKNAGYSESLKLMWYWRPIADKIL
Ga0209337_10136713	F069451	GGAGG	VKPGDLVRVRKSAINAYSTLWFIDLAERKAPLLLMEKLNKQHWKVLKPDGTDCFLSENKLTTRMW
Ga0209337_10136714	F021674	GAGG	MERETYNSRLRSNPEDIPVGSLLRVKKWCRKNDTIKNNGEFSILIERPGGTYISHDIVFPNGARTIFIPMNWDVVSYAR
Ga0209337_10136715	F006383	GGA	MHDKMWKVQQPGTILRARHSARYGQLALVLTEAYHEIRGTETRGNHYVKMQIVSTGERIEESLTNANNCWDIVSECGT