Scaffold Ga0209337_1012882

Overview

Basic Information

• Taxon OID: 3300025168
• Scaffold ID: Ga0209337_1012882
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-53 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5168
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (60.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 49.5666
  • Long. (^o): -138.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F089531	Metagenome / Metatranscriptome	109	Y
F098014	Metagenome / Metatranscriptome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209337_101288210	F089531	N/A	MHQQNPPHVEIMSHNVKMIGADVHVIKNGGWRGKVEEMVDEEYFMVSRFDNPTDIEKVSMYDIRSLSYETL
Ga0209337_10128823	F098014	N/A	MSDLPYSEESFMLKQAVCKLMEVSLDLGTNRGNALNGEFKKMDDLLNLMSRVKNNMEKKNEHLRI