Scaffold Ga0209337_1012105

Overview

Basic Information

• Taxon OID: 3300025168
• Scaffold ID: Ga0209337_1012105
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-53 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5367
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (81.25%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 49.5666
  • Long. (^o): -138.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008590	Metagenome	331	Y
F009562	Metagenome / Metatranscriptome	316	Y
F012507	Metagenome	280	Y
F094548	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209337_101210510	F009562	AGGAG	MLAIPLFRTDDDSKMTPIERTAFGCEQVITALMMQATIDDPTVSAVDIETYTTLSVATLVPAEA
Ga0209337_101210514	F012507	N/A	MWTDKLKIGDLVWSRRDNKPAIILDSEETARAKYGDIANKRLQFKLHVDGEQGWLDEVKLRVLYKLP
Ga0209337_10121052	F094548	AGGAG	MIEVGSMVQSKYRLSSGKEGNLGLVMDLRNTAEEANALAHVYYPKTRTFGWVVAKDMKVV
Ga0209337_10121057	F008590	GAGG	MKVGDLVTYSFQRSRWRKGESVSLGLIVEIGKYTANRDVKVLWTDQTEPETEASQHLSLVDKSLTT