Scaffold Ga0209337_1011627

Overview

Basic Information

• Taxon OID: 3300025168
• Scaffold ID: Ga0209337_1011627
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-53 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5507
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (37.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 49.5666
  • Long. (^o): -138.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016882	Metagenome / Metatranscriptome	244	Y
F054361	Metagenome	140	Y
F060349	Metagenome / Metatranscriptome	133	Y
F072850	Metagenome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209337_101162711	F054361	N/A	MGFVNQTAGYDKKKVRKYGKLYGSIDFELNDNISKHYFENNEAPVVGKLHIGNKTFDVTYDELDVIAKTLYSAKDVVNRKHKLGLMR
Ga0209337_101162714	F072850	AGG	MKLHELEILENDFDLFVALDDVDKIEFLFDATHVGLEAAAIKQVCKLAEKYSPEASEEPIISVQDFEIGDNRLCVTQYPNVIHLNSDSLRAIRDFVDKLFNDGILLSRRPADKTEFDMYRFLRVYEIVGKVHPLSGN
Ga0209337_10116277	F016882	N/A	MSYYVVKVKIATDTPKGVKWQTETYLVNAVSVTHAEALVVEDFKNDGVEFEVKSVSSSQICKVINNSKNV
Ga0209337_10116279	F060349	AGG	MDKHQKKVLKQYPNAYVEHGMGGLRIFSGDVFLAQEFYMPSTNDEDVAWEYAAMACRLTQNFNRAHPNRMNLTDIEGRLNRIHKRKKRGRRAKQN