Scaffold Ga0209337_1011277

Overview

Basic Information

• Taxon OID: 3300025168
• Scaffold ID: Ga0209337_1011277
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-53 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5604
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (7.69%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 49.5666
  • Long. (^o): -138.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009889	Metagenome / Metatranscriptome	311	Y
F036974	Metagenome	169	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209337_10112773	F036974	N/A	MIDPYKLEFWDSFNDSLYFDYLLTKEEMLNTYRVTYKTYKGSDTSAPVSYAIKYIKAYDKTDAKNAFDLWNGLIIKIELCD
Ga0209337_10112778	F009889	AGAAG	MRIYSLICVLTLFSCSANYHYRRALKKGLEPTISSDTIRIATIDSIPVVKHDTIIYEKYFSSKDTIVHYENVFVPKTRLETRIEYKIHRDTIRFETRVEVQKAKASKQPNYLLYIFLIVLVLGALQIFKKFL