Scaffold Ga0209337_1010966

Overview

Basic Information

• Taxon OID: 3300025168
• Scaffold ID: Ga0209337_1010966
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-53 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5694
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (27.78%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 49.5666
  • Long. (^o): -138.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005364	Metagenome / Metatranscriptome	403	Y
F057678	Metagenome / Metatranscriptome	136	N
F061281	Metagenome / Metatranscriptome	132	N
F089408	Metagenome / Metatranscriptome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209337_101096610	F057678	N/A	MVEYEVNDRVVFRFNDINEVAVVTNVRRHKKTITGYDIRSEKGSGYVIVQVDANLTTRQRNKRVEYPLIDANLTANWVGSDSETNLFAKENLGHTRQNFPKGMPLFLDGEGPGLVQHFEKRNDFLFPTQGPRSY
Ga0209337_101096613	F005364	GGA	MNKTDLRDKLKNIVKEEVSSMLSERDYKYGGLLDPENFDPVDPEVHIIGFGTMTRSALRQEIVRRMTGATKTAKDAATGGSNSYDKFKSLEGILEPNGVLLQQIKAEREISQQLEQLRSQGGRRAIPIPKQT
Ga0209337_101096618	F089408	N/A	FCIRFMVTCYNDRPMLRKKYQQEEPDLIEELLNKGRTTAVLSINLKGVSKITDHYIYEVHLLDNGTEKTIPVIAIDVTQALAKLEPHLDIGIPSTTLKWMLGTERNVTATNVNL
Ga0209337_10109669	F061281	N/A	MNKFQKKVLKQFPKAYVESSVTGLRIINNDQYLAKDFYMPDTTCEDTAWEYAALACKMAQNFNRAHPSRMDLSDVENKLARINRRKRNGIRVK