Scaffold Ga0209337_1010864

Overview

Basic Information

• Taxon OID: 3300025168
• Scaffold ID: Ga0209337_1010864
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-53 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5729
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (61.90%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 49.5666
  • Long. (^o): -138.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002743	Metagenome / Metatranscriptome	533	Y
F015479	Metagenome	254	Y
F020715	Metagenome	222	Y
F044543	Metagenome / Metatranscriptome	154	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209337_101086413	F015479	N/A	MKILMIIATGAVVTFPMDERVTADCFEQGHSILQKISTYQGSGTDQGWYLKGKPIQVAGWYCKY
Ga0209337_101086420	F002743	GGA	MNDEDKVYRDLLDHVLHLLDHKLPVVMVAASLMAIAQRLYRTHLSEKDYERIMKIAYEINVEPYDIKKGTLH
Ga0209337_10108647	F020715	N/A	MTKKLSSTRNPIARLLKHFTPQRFKDKTKYNRKNDGQIWKRYFWKGL
Ga0209337_10108649	F044543	N/A	MSRKIILNIKGGSKKQYSTLVLELDLISKSWSKFGVSISLPGQEKTIAWGNRKHDDKNTAKISN