NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209337_1009678

Scaffold Ga0209337_1009678


Overview

Basic Information
Taxon OID3300025168 Open in IMG/M
Scaffold IDGa0209337_1009678 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-53 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6164
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (36.36%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)49.5666Long. (o)-138.6666Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001235Metagenome / Metatranscriptome741Y
F051547Metagenome144N
F060433Metagenome133Y
F071758Metagenome / Metatranscriptome122Y
F102085Metagenome102N

Sequences

Protein IDFamilyRBSSequence
Ga0209337_10096782F051547AGGAGMIDPLLIATISVIGGAVLNTFRGFLGSDETTYDIKKFFGALIVAVFAGIAVAQTLSLAGLGIVETVLIGLSIGFSVDYAVSKAKKTE
Ga0209337_10096783F060433N/AMELSAIIETLLIACVLGMGGALFGFFKKMSSTQKDLCDTVAKLQKTIIILAKALDRQTNRMHPDEAESDLDDLVKELLDKP
Ga0209337_10096784F071758N/AMDEKCKNCKINKYGYTDGQHSIFICFKCGRYDGISGGDDAFVDKINEEPMALLHMIQEKILIPISGV
Ga0209337_10096785F102085N/AMATSIYIFDNDKMFNSIYREHANELEHKMPLIDLYVKGEKLWVVTNSNDMKEQPRMDRSIVHFRKDNAKEWIEGDEKLVLHGKIRYNHKRNQLEIFPRFLRKPLLSMRVGRYFGYKKGKCNINYSKRFYDFKNDRMLFILEDNK
Ga0209337_10096788F001235N/AMTKKLWEKHQADEFTAVNEYKEGVCLGCMKVDRAAATIADICGDCAGKKGREPLLAKVCDKYYGLCFFCSKYKFNIEQINGRFCNTCHSRIAKITKEYNAKGGFMKTDPFWISMRKKHGKDWKQIMGGYRKSNRK
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