Scaffold Ga0209337_1007136

Overview

Basic Information

• Taxon OID: 3300025168
• Scaffold ID: Ga0209337_1007136
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-53 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7439
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (57.14%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 49.5666
  • Long. (^o): -138.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012639	Metagenome / Metatranscriptome	279	Y
F024225	Metagenome	207	Y
F029595	Metagenome	188	Y
F036475	Metagenome	170	N
F071255	Metagenome / Metatranscriptome	122	Y
F104046	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209337_100713611	F029595	GAGG	MKCFESPSGMKNPIIWHKRQSVRDFVKQKPMFSQLMSESKNCMLNHPELKNNVKGAIQCETIHPATMSQFNNYTFHTHPHNIPYPSQVDKNTTRKLNKKYLLIGVVPQNRTYVFSDEDNFEKAIATI
Ga0209337_100713615	F071255	AGG	MSENDNNESYMKLDELSGKLKEGLSEEFSTIKGSINELADKMDLTQKEKDGMASVSDFVEHLDNCDNENCEIHKSINTKQNNFYMKGFLLGAKFGKQKRN
Ga0209337_100713616	F024225	N/A	MKINFTTETIDRKLYEKSILTYIYDHYLFNDYRRLVEQDKWEVNIRTLKDFNWNFYDKNIKNLSKKMPHGVTGDNVVDCYVTDESNRMYYLQNMMVICHELSHMILKLYYPDSRGMLDHDDTWGKAGDVRNYFSTEIHNRVARGQTRKFTAWHEREYYFYGIDIDDITNKRNLNNGI
Ga0209337_100713618	F036475	AGGA	MTPLQKLTLEILNDCMQIVEKRVSNPVYKKVIVSMGYPYAKKEILRTSDAELKKDMNLVYNRLKKHFNKKQLKDEIDFSNSISDIKVPKFISEPVGDYF
Ga0209337_10071364	F104046	GGA	MYYNQELNKTVQWNTHELSGGVPVFGFNTKQIYAPQALDNVLDQGGFDTINPNVFRGKRTNGELNYELGQPMRKVFAQSYHAPRNNNAWEYNINWSNS
Ga0209337_10071368	F012639	AGGAG	MSSNNSGLVLNCTAQYAIAAPVATVLSVTMQTSPTVTGVTELQVPLTENWIATDVYILAAAGAGSATVIAPVITMDKNRGRTLVQTPPLNAMLITSNTRPRFSPQPIGFEGGSIIRMFATSTVLNGGAVSNIQFSVAISIV