NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209337_1007136

Scaffold Ga0209337_1007136


Overview

Basic Information
Taxon OID3300025168 Open in IMG/M
Scaffold IDGa0209337_1007136 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-53 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7439
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (57.14%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)49.5666Long. (o)-138.6666Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012639Metagenome / Metatranscriptome279Y
F024225Metagenome207Y
F029595Metagenome188Y
F036475Metagenome170N
F071255Metagenome / Metatranscriptome122Y
F104046Metagenome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0209337_100713611F029595GAGGMKCFESPSGMKNPIIWHKRQSVRDFVKQKPMFSQLMSESKNCMLNHPELKNNVKGAIQCETIHPATMSQFNNYTFHTHPHNIPYPSQVDKNTTRKLNKKYLLIGVVPQNRTYVFSDEDNFEKAIATI
Ga0209337_100713615F071255AGGMSENDNNESYMKLDELSGKLKEGLSEEFSTIKGSINELADKMDLTQKEKDGMASVSDFVEHLDNCDNENCEIHKSINTKQNNFYMKGFLLGAKFGKQKRN
Ga0209337_100713616F024225N/AMKINFTTETIDRKLYEKSILTYIYDHYLFNDYRRLVEQDKWEVNIRTLKDFNWNFYDKNIKNLSKKMPHGVTGDNVVDCYVTDESNRMYYLQNMMVICHELSHMILKLYYPDSRGMLDHDDTWGKAGDVRNYFSTEIHNRVARGQTRKFTAWHEREYYFYGIDIDDITNKRNLNNGI
Ga0209337_100713618F036475AGGAMTPLQKLTLEILNDCMQIVEKRVSNPVYKKVIVSMGYPYAKKEILRTSDAELKKDMNLVYNRLKKHFNKKQLKDEIDFSNSISDIKVPKFISEPVGDYF
Ga0209337_10071364F104046GGAMYYNQELNKTVQWNTHELSGGVPVFGFNTKQIYAPQALDNVLDQGGFDTINPNVFRGKRTNGELNYELGQPMRKVFAQSYHAPRNNNAWEYNINWSNS
Ga0209337_10071368F012639AGGAGMSSNNSGLVLNCTAQYAIAAPVATVLSVTMQTSPTVTGVTELQVPLTENWIATDVYILAAAGAGSATVIAPVITMDKNRGRTLVQTPPLNAMLITSNTRPRFSPQPIGFEGGSIIRMFATSTVLNGGAVSNIQFSVAISIV

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