Scaffold Ga0209337_1006082

Overview

Basic Information

• Taxon OID: 3300025168
• Scaffold ID: Ga0209337_1006082
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-53 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8155
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (29.41%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Pacearchaeota → Candidatus Pacearchaeota archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 49.5666
  • Long. (^o): -138.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F050687	Metagenome	145	Y
F076521	Metagenome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209337_100608213	F050687	N/A	MSSQNYKGYLKNKIKVMINSKEAFMSKFKRTKKRLQKKFPGAELSTTPSGQFYIGQYGKNIIGEDYLDLAIAKTAWEAWRNLDTVEHWNRINTRNKKKLRKSLNHIVVSGDTSTYDPTDYIETPESFTISDGEEW
Ga0209337_100608215	F076521	N/A	MAHKTNYKQNNRQERTKFNPSKFGSTWASIFWKGKPGLTAQGEANQPVIGSLNIGGKQFDLTFSECNKLIETLIDAKEAAKVSKRLGTTSNGAGSPVGFMEVMSEMYKK