Scaffold Ga0209337_1005443

Overview

Basic Information

• Taxon OID: 3300025168
• Scaffold ID: Ga0209337_1005443
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-53 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8682
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (71.43%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 49.5666
  • Long. (^o): -138.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028833	Metagenome / Metatranscriptome	190	Y
F032811	Metagenome	179	Y
F051205	Metagenome / Metatranscriptome	144	Y
F092216	Metagenome	107	Y
F101337	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209337_100544313	F032811	GAG	MRVAPGCYFEQEEEEPIDPIRGRKTSANIKEPTYRRRSTLEDIPDNYSERIMRMNGTARSVPEREVRTPEGFAVTIAYNKSGYQVIPKEDLKN
Ga0209337_100544318	F028833	GGGGG	METERRLRGKITYMWSDGVIDNIARKVAEEPMEDVPQHVIDEERGDMLRQMRKEQAQMEMYDDPYLNWSGHR
Ga0209337_100544321	F092216	N/A	MKKKYDRFDLEEEIMKVWQTEDDLDAVVHRMMEDPDPIPNKEIANLLISVSKIHDLRCQKLFDIFEKMVIDNCFVYKGTSLDYRGVPLDEDNRQATLWEDEVTIEEF
Ga0209337_10054435	F101337	AGG	MLEILIFGLVVFAVICLWVLIEQRKSPKFLIWFIPLFLVLVTSTYLTYTSILGFPKEGIPSKGLYLKHHIDEPDWVYIWVLGKNNIPMGYKLVYTRAIHNSLIGVEGKANKGKFMVLGEDEEMVEEFDGEPGEKGYGGFTVGGDISFYEWDYSSAMPPKNITN
Ga0209337_10054436	F051205	GAG	MLLLIFVMIATWIVVGCGTSTTGCYGHWVKGPGQHRGTRALLKDAHLPYYQCVDENNKGTNLEERSYL