Scaffold Ga0209337_1004952

Overview

Basic Information

• Taxon OID: 3300025168
• Scaffold ID: Ga0209337_1004952
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-53 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9148
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (86.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 49.5666
  • Long. (^o): -138.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012123	Metagenome	283	Y
F023845	Metagenome	208	Y
F044427	Metagenome	154	N
F059445	Metagenome	134	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209337_100495211	F059445	AGGAG	MNLNEIVDSLIELSCHEMPEEARKSLDNAIDHIVSNMNDNQLKDVLGNSIEGPPKGHVWKEEGDEEEIKAIKSLMEGNIAIA
Ga0209337_100495213	F012123	AGGA	MIKRNPCRVKKVTYDQDGMKIVEQRGYAQERKTIDGEESVFVMEGGDTGIGYWYPKNEVTFVHSGWRNKTSEPSKKSYWTRAK
Ga0209337_10049526	F044427	N/A	MNKVKYTKEIKQLRKLLADNEYTRTLSSKYHQFLSDMHLKMVSASRITPKMEKHINQAFMYYENHTNPEVRCRRESMLAKITKLKYLLSQCNYTQQYEADKMFFLDGLTDRINKLGTLSPKQAKYANQMYKQFNRKILPKSA
Ga0209337_10049529	F023845	GAG	MSLLTYYKSTHDDIEKLIEDHVKECRRSIPWSGENKTVVRNIINIFKKTH