Scaffold Ga0209337_1003811

Overview

Basic Information

• Taxon OID: 3300025168
• Scaffold ID: Ga0209337_1003811
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-53 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10564
• Total Scaffold Genes: 31
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 28 (90.32%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 49.5666
  • Long. (^o): -138.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025173	Metagenome / Metatranscriptome	203	Y
F034392	Metagenome / Metatranscriptome	175	Y
F049946	Metagenome / Metatranscriptome	146	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209337_100381116	F034392	GAG	MNRTDKIKEGDLVVRRGDKKPYIVLEVKRYQRKVYGAGPSGNRRKKFLLLSPDGRQSWKIDTAMKVEFYLPGSPYFDDIR
Ga0209337_100381121	F049946	N/A	MKPLLKTIAKDIIVLSAQALAFRLAAPQEQQQDIVFAAVPTKGSTALKALPADDEPQARKVGF
Ga0209337_10038115	F025173	AGGAG	MANGYQMFKSLHPVGGLYRYKAPHGIIRADPWSDGKVYLLTKWERPEGIDKKSPLLNAFFLVNGTEHCVDISFFKYLKAVE