NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209337_1003726

Scaffold Ga0209337_1003726


Overview

Basic Information
Taxon OID3300025168 Open in IMG/M
Scaffold IDGa0209337_1003726 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-53 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10702
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)19 (86.36%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)49.5666Long. (o)-138.6666Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005353Metagenome403Y
F030558Metagenome185N
F094400Metagenome106N

Sequences

Protein IDFamilyRBSSequence
Ga0209337_100372618F094400N/AMIKYPMVLVTWYDAKDGQTGWHSVTDVQKEPLAVCHSMGWMVTHNETKIVIMADYSKYDLEQDGGRHIAIPTGWVKSIAYLDISYTKKENA
Ga0209337_10037263F005353GGAGGMFTIETALKQVSVTEKQVKKIRAELPKLNREKVDRELKILLLDLRLLNNDLQAIKEKDEH
Ga0209337_10037266F030558AGGAMGRDKQKIGDVSEFKAVIKFLQEDYWVFRNVQGSGPIDMVLVHKKTGEVRKIDVKTTSYRKSWRPGTKICRQRTPEQIQLKVEYAFMEKDDV

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