Scaffold Ga0209337_1003726

Overview

Basic Information

• Taxon OID: 3300025168
• Scaffold ID: Ga0209337_1003726
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-53 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10702
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (86.36%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 49.5666
  • Long. (^o): -138.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005353	Metagenome	403	Y
F030558	Metagenome	185	N
F094400	Metagenome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209337_100372618	F094400	N/A	MIKYPMVLVTWYDAKDGQTGWHSVTDVQKEPLAVCHSMGWMVTHNETKIVIMADYSKYDLEQDGGRHIAIPTGWVKSIAYLDISYTKKENA
Ga0209337_10037263	F005353	GGAGG	MFTIETALKQVSVTEKQVKKIRAELPKLNREKVDRELKILLLDLRLLNNDLQAIKEKDEH
Ga0209337_10037266	F030558	AGGA	MGRDKQKIGDVSEFKAVIKFLQEDYWVFRNVQGSGPIDMVLVHKKTGEVRKIDVKTTSYRKSWRPGTKICRQRTPEQIQLKVEYAFMEKDDV