Scaffold Ga0209337_1003434

Overview

Basic Information

• Taxon OID: 3300025168
• Scaffold ID: Ga0209337_1003434
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-53 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11206
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (22.73%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 49.5666
  • Long. (^o): -138.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025412	Metagenome	202	Y
F027524	Metagenome	194	N
F059442	Metagenome	134	Y
F100003	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209337_100343421	F059442	N/A	MRKEDRYRPYIYKVYNSRGNLEEYSRYYRTKKEAVEWYNTQGKWLEQNLNRKLILIDTDINLFTNVPSSLFNR
Ga0209337_10034344	F100003	N/A	MKIKKKHYKALQYASLIQRWKYLPSNFIFEVVQNSEVKEGMLNRNRIERNDKRI
Ga0209337_10034346	F025412	N/A	MNYRELKWGALKSYATKLGINTKGMTKVALLECLAAMPEKAHEVEELTPFTGIKQEHPLFNEVEPYLPYLKAYKKLNAISREPKVNEAIATLFLKYIEQDKNVRINLGCGICKQRYYQRMIAGYNRLAEEYGGERI
Ga0209337_10034348	F027524	N/A	VNEAFIKEKRQVIETACKNICKHSDIWKDLAQEVNIYFLTNELPSNLNKIDGFIFVVAYKMFHLSGSEFNRLHFDNVLQESTELDYLKLKDIPYISNNVYKEYLEQVKQLDEMERIWVEEIVKRNLSIKLFSDHTGIHRATAKERMESIYNKLRKQNK