 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300025168 Open in IMG/M |
| Scaffold ID | Ga0209337_1002554 Open in IMG/M |
| Source Dataset Name | Marine viral communities from the Pacific Ocean - LP-53 (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 13116 |
| Total Scaffold Genes | 15 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (46.67%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → unclassified Nitrosopumilaceae → Nitrosopumilaceae archaeon | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Pacific Ocean | |||||||
| Coordinates | Lat. (o) | 49.5666 | Long. (o) | -138.6666 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F034394 | Metagenome | 175 | Y |
| F042629 | Metagenome | 158 | Y |
| F053638 | Metagenome | 141 | Y |
| F087902 | Metagenome | 110 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209337_10025542 | F087902 | N/A | MTYTNHNAKDIAADGAVKAGHGVIVSVHVTKAGASGDKVVFHNGDANSDPVEFTVYGEGIQNIQDVMRRFENGIYAEVTGSTAKYIVVFK |
| Ga0209337_10025543 | F034394 | N/A | MVTTTTYCSVGDISDFLRVPITSTTTPNKEMVRKIIARKEEELDRRIGHTWKTKKITREVHDLPLLYTFGWGTPIFLQHRNIQILNTSEGDKIEIWKGESDSWENIVGQDQWYHCEYERGTLHLRGYLFTILRKNRVRVTYRYGGENFAGDTEIPLDVTDAVIKMASIEIMNTSFRMDEIPSGGSVSPSESKRYWQEDIDLCVSNRREVFVVP |
| Ga0209337_10025545 | F042629 | AGGAG | MTILTYDAVDDVIDLLRTKWSSLRPPHITKVWEKRTVGFIDDRSDEVIVSPKGENIEVFGLGGSAFWHEQIIELDIRTYQNIKRHDKVVKEIVGIIKDNIVGDTYTDLRVIGSFSRNFQFRNMFNYVITLSYRKANPV |
| Ga0209337_10025547 | F053638 | N/A | MTLIPINITYNGKPAVVEFEDSLTFGDTETLIGASVDLSDVTKPKIDLPRYRLNLLSLTIKKAPFPVGNTTAIKMQDSKIIKSILKEIVKVHPLTTYIEDWMETFMSSEEMTNLDTQSTTTAPASSDGTKKRLTSKK |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |