Scaffold Ga0209337_1002296

Overview

Basic Information

• Taxon OID: 3300025168
• Scaffold ID: Ga0209337_1002296
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-53 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13962
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (66.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 49.5666
  • Long. (^o): -138.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006773	Metagenome / Metatranscriptome	365	Y
F015360	Metagenome / Metatranscriptome	255	Y
F019253	Metagenome / Metatranscriptome	231	Y
F030460	Metagenome	185	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209337_100229618	F030460	AGGAG	MNRNEVITGLQALRYKLESSSGFQYDSEEDKEYFDKVLSEARLAVLLNEQNDQHAKFNHGKF
Ga0209337_100229621	F006773	N/A	MSKVTQTKNSLPWRAGSETVEYFVEVGTTPYGKYGLYKEMIPVGIRGRGRHLETATEIQLSNPDIFENLKLRQVVSRG
Ga0209337_100229622	F015360	N/A	MTKAKMDYLWAPKDEKLVSSLLDSLGFTKVGESKRYPTGVKYDTLVAICDVISSNEKTASLVASQVHHLQSKRRVSKRAPSVDSVVQALQSGKMSEADLKKAMKKAGLI
Ga0209337_100229626	F019253	GGAG	MNVEAVKKFNNFMTQHADKVPLLSVQSTNDNRFTVLREFLTASFEDVEDNAWSVSQNLGKFIDALSTMEPQDIKKITNTVRKYEVKGENFGIHGDRTFGFDKSRVDQRLIRRRRAN