Scaffold Ga0209337_1002075

Overview

Basic Information

• Taxon OID: 3300025168
• Scaffold ID: Ga0209337_1002075
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-53 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14765
• Total Scaffold Genes: 37
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 36 (97.30%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 49.5666
  • Long. (^o): -138.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010027	Metagenome	309	Y
F012400	Metagenome	281	Y
F024571	Metagenome	205	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209337_100207511	F010027	GAGG	MAITANSQYMFEILNSDELAAHPKSGLKTLVVSGSCTNADGVSFDFIATNNLDQRYPDRFKVNWNGKAARMPEVVGFGMADDVRTGRKLTEELYFTRGARIAIARKCKSLFPLWKQAAS
Ga0209337_100207522	F024571	AGGAGG	MDLNVDVIDNETGEIYREGVLLANAHIFITQENGKIVKEEVNTVHLDDIDGGGEIQVRDIYVDFPEERMKRDLSADAIIRAREFWQYEKGGGQVR
Ga0209337_10020759	F012400	AGGAGG	MKKKYTIKKFNGDDQYSWAVFRAADVKGMRSPIFYGDANPVINGLGRSEAQYHRDRLEKI