Scaffold Ga0209337_1001974

Overview

Basic Information

• Taxon OID: 3300025168
• Scaffold ID: Ga0209337_1001974
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-53 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15135
• Total Scaffold Genes: 48
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 37 (77.08%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 49.5666
  • Long. (^o): -138.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003834	Metagenome / Metatranscriptome	466	N
F005743	Metagenome / Metatranscriptome	391	Y
F014898	Metagenome	259	Y
F025387	Metagenome / Metatranscriptome	202	Y
F026152	Metagenome	199	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209337_100197412	F005743	GAGG	MSRNLIVYKVDYVNRHEDYNTQTGRFVRTKRIVMTPDEVNQKDGYWRNHRNVEKKFYTQMIGVPDGCWDSKYRVMRVRKA
Ga0209337_100197414	F026152	N/A	MKKNKTPKHWTAKAWAEHLLHISSFTDVKEVKSVPSNTRKQVSRKSNKSKQSSKAAI
Ga0209337_100197417	F025387	GGA	MTKRVEQLGEMIVRLITYPIRATIGVCQCIHKSTPDTLDDCMPFEIKKKEEKDGNKTTS
Ga0209337_100197419	F003834	AGGAG	MSSSKTPIRQAEMDHIDHFLETKYDNRKNILKTEMQDTIDTESEENFDAFKEKLKLTKLHQDVRIYFDDHEKFRNEMDSILLEKESKLNNAINDLEVKLENWKKVRKWNTEIERSLIKHPDELDRLLKKICHEETSRDFYSGPRGKALQMLDMSKEYCKNLLNAGQSLATVWKTIDVEMSKEKINTSTIPKPEFLAITK
Ga0209337_100197442	F014898	N/A	MINEKTIILLLFLTLIGVGLVGCKTNILNTAVCPDKTTVEIGISETDSKNDKLQEKKSIIQTWKWGKKKCDES