Scaffold Ga0209337_1001970

Overview

Basic Information

• Taxon OID: 3300025168
• Scaffold ID: Ga0209337_1001970
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-53 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15166
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (75.86%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 49.5666
  • Long. (^o): -138.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017322	Metagenome	241	Y
F022523	Metagenome	214	Y
F039876	Metagenome	163	Y
F083398	Metagenome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209337_10019701	F083398	N/A	LTFKEITVINVGDIVFQRRKGGLMNNQPLESRLGLVIKDHRDKGAIPQFYVQFNKELPKWYYQHDLHRIGGERNKNAKF
Ga0209337_100197013	F017322	N/A	MEQWRKFLKEGISDVVYHYTNGLEKGAKILEQNRFMASGGFTKDVESELGKGKLYYFSTARTPVNAYTGNYPQGVIFKLDGRALGQKYKGVPLDYWATKKRSSKKAANPDPGEIEGFEAEDRILLDEPYIEDADRYIDEIHFAIPLYRFEKGMFDDEPKRKAGSAIEAYMMKGLRDGVAVAEQRNIPYYIHIDKTTFPFVEVGKKKALTSLAAFMEEVEKSGVTVNEPRDQASVYTSRRGTEIGEDEVFLYVQAAQDILAGKEQFEGASVKDKAGYKDESQRKDLGKVMFRNLTGSPNLQGRFYRDIDNPLHNVSSNPQARKTLEMLASLMRSTKQKTIKDFENYLNQVYKKNHPEGDPTGYRNS
Ga0209337_10019704	F022523	AGG	MKIGDLVEFTYGRVGGQIDGIGILAELGTCGKHKVLFMGKGYWVPDAVVKVISMQRSPAVNEPLDN
Ga0209337_10019708	F039876	GGAGG	MIYKSLFLLVFANLFNQAYQMQNITCPKWVPGTNQILPAGVTLSPELELKNRVRCYCEIVKPQERGCIANNIPRNLCEARTAIWIENNLLLREGFRQTNSPMPLPQRDRMINVQP