Scaffold Ga0209337_1000825

Overview

Basic Information

• Taxon OID: 3300025168
• Scaffold ID: Ga0209337_1000825
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-53 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 24691
• Total Scaffold Genes: 55
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 49 (89.09%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 49.5666
  • Long. (^o): -138.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005620	Metagenome	395	Y
F014071	Metagenome / Metatranscriptome	266	Y
F048646	Metagenome	148	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209337_100082515	F014071	AGGAG	MATRPGRLIDKTFTSFTEASGRLEDTIGWVTKAKDFAHEFEPGCKAEVTLHLLEEVLEKAGRELDRASTELAMEVFGDK
Ga0209337_100082517	F005620	AGGA	MTQEEMYTKQVETFKTFCKNNRLRLKEDGDGLPVARAIGKFKDDQFFCNFKDGTIGVYVTRESPRQFTYLNKKLMKMGCMPTQLGDFEAAYDLEWMNIPPVARLLKIKKGAAKVSDPKWLRQ
Ga0209337_100082528	F048646	GGAGG	VLKVSEVYEKQIKNTIERPDGSSYINFEKVYTDRECLISTKYIVSVRPYEFTATQDIQKLDGRFPEGAKFSTLVLDGNSFRTSEMIVVGSFESFCRRLQEKAS