Scaffold Ga0209337_1000684

Overview

Basic Information

• Taxon OID: 3300025168
• Scaffold ID: Ga0209337_1000684
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-53 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 27333
• Total Scaffold Genes: 50
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (20.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 49.5666
  • Long. (^o): -138.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026406	Metagenome	198	N
F044200	Metagenome	155	Y
F069354	Metagenome	124	Y
F076604	Metagenome	118	Y
F087907	Metagenome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209337_100068425	F087907	N/A	VDKPTSRYNIPIWLSNWTFKDSKNKIYTLDNHIVKGYNKGTIFTNKIIVNKAVNKLVGTRSKKKLVPVNLTLLSQHGYGVDDN
Ga0209337_100068434	F026406	N/A	MKNSVVFEGGIDKVSTLADGSLRVYLGTPELSNETMVNLFGLIKKPGYILISTNTINQDQIDAVEKATTNAEFSEKTPSQRMRGVMYKLWEKTQPKTLNGDSGEMEYVEFDLFYKRQMNKIIDHFKTKLD
Ga0209337_100068439	F044200	N/A	MSALPFNLNTTTTGRAKGEKVEYITTGAYECKITSLSTSEQLEDYKGSPFIQYAVTSNGKVGRCRFWVVKETDKPSTQEWKSKQIKDFLVNAGIKDFNDDSKAMNDAIGNSLMITFISEEYISVNRDNQEPVIRTATKYRWSAKSGGKCTYNHDMNQTLTDEQMSEFSEKHAAWSKANSSVAANSNDEDMPF
Ga0209337_100068444	F076604	N/A	MSEVTTCCGSSYEDSWISDCCTVEMHADSDVCPACKEHTEATGYICNECGNWNENLEELSEYNARKKENHYEEMADARRKYGE
Ga0209337_100068450	F069354	N/A	SCCVTIDTEYYDELYDYLTDIDVDLNELNIDDLVVNGIQFLDKKDSEDYYILKETDEGCWVI