Scaffold Ga0209337_1000458

Overview

Basic Information

• Taxon OID: 3300025168
• Scaffold ID: Ga0209337_1000458
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-53 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 32944
• Total Scaffold Genes: 50
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 26 (52.00%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (37.50%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 49.5666
  • Long. (^o): -138.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F053550	Metagenome / Metatranscriptome	141	Y
F056918	Metagenome	137	Y
F070556	Metagenome / Metatranscriptome	123	Y
F074050	Metagenome / Metatranscriptome	120	Y
F077815	Metagenome / Metatranscriptome	117	Y
F092746	Metagenome	107	Y
F092748	Metagenome	107	Y
F094425	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209337_100045811	F056918	GAG	MKQLKVGDVVIAVFLGSPEPCEVIAITNKKEKLYKLRMNSGTILPGVTWLKNLDAKQKKTKPWHILKYVKHVKPKVQKDDKIKRSDLDQAIDEQRKFIRGEIKE
Ga0209337_100045818	F077815	N/A	MQGTDLKNRLKQIIREEVHSCLKEASYKFGTLADPKDMDPNDPMVKVTGFASLNRSSVRNQIVDRLSGALATAKDAAKGGESSYQAYKQLQDLISDAGILYKLIGAELDVANALEATRLKGGRRTIPIPKQ
Ga0209337_100045819	F074050	N/A	MKRSYITKLVKEEIHSLKNEASSKAIKRGTVTDNARLAMILTSLGKRAKGSFQKRKVVSQVIMQLATALEITPNEVLRAYIDYKRDAKGDASTKVKKDD
Ga0209337_100045827	F053550	AGG	MREEIKKARLKKKVMDNYPNATVEYTNTGVQIMSGDIYIAEEFYLPVTMDVETAWEYAAIACKTRQQFNRTHPMRMDLSDIESKINRINKRRGPRNKRK
Ga0209337_100045829	F092748	N/A	MKVTKPYSSLNQVAAINEKKVEHLGKNYATIDFEIKDQVNPTDFKYAKMKPVVGTFVIGNKRVEVTYSELNHILRTAAAAAEQCDMAYRIGKWGRAQKR
Ga0209337_100045830	F070556	N/A	MGFHKRYINDDQVIELYRTQGNQAVIDLYTKGVDAVITQGDLSEHVLDMLEIGLLTEVDKWNKISELISDASIEKGFE
Ga0209337_100045835	F092746	AGGAG	MSDIKNPQQVKRQLDEADNMLSILQNVIHRGLKIEPQEAQERFSKIRSKIKYAMDSISG
Ga0209337_10004587	F094425	N/A	MKKKSEIKYGIEITKPHSKDMYSHNDMVAKEMKFNIRDAWANEVIKFNANDEWPTEGKIVDIQKGVCAVGYGEGYTIEEVQNDFLQELDNMANWQLHEEYSYMSFKNSLVPRTRFMMVGFDWEKHDYSFCTDIDISPIARMEEQVNNI