Scaffold Ga0209337

Basic Information
Taxon OID	3300025168 Open in IMG/M
Scaffold ID	Ga0209337_1000403 Open in IMG/M
Source Dataset Name	Marine viral communities from the Pacific Ocean - LP-53 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300025168 Open in IMG/M

Scaffold ID

Ga0209337_1000403 Open in IMG/M

Source Dataset Name

Marine viral communities from the Pacific Ocean - LP-53 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	34663
Total Scaffold Genes	46 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	31 (67.39%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (85.71%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

34663

Total Scaffold Genes

46 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

31 (67.39%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (85.71%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	49.5666	Long. (^o)	-138.6666	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Pacific Ocean

Coordinates

Lat. (^o)

49.5666

Long. (^o)

-138.6666

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000659	Metagenome / Metatranscriptome	952	Y
F000942	Metagenome / Metatranscriptome	826	Y
F001334	Metagenome / Metatranscriptome	720	Y
F006198	Metagenome / Metatranscriptome	379	Y
F050681	Metagenome	145	Y
F068119	Metagenome	125	N
F093990	Metagenome / Metatranscriptome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209337_100040312	F093990	N/A	MAKNIGLEKIKEKRDTLIEQFNSLQDKKKEMLKQMELVDTDIVTVRGAILLCNEWVTEIEPEPSKEEETNGGQTNN
Ga0209337_100040316	F001334	GGA	MMKFKEYLQINADDSIEQVMNGEWILKSRTTWKATDDKDNTLEIHNDGHDPELKGESWSVHNNTFAPKAFAFFCKQFIKEAKPSEVIHVRTRIFPTT
Ga0209337_100040317	F068119	GAGG	MSEQESFLLLKSEIQALKIKDEYRTKELDALMKKLDNSTSKLNDLSENIGRLLTAQDVNKTNDNEFRDEMKILHTRIGDLQDKMNVMIEKTETRMNTDVNLIYTKLESLERWRWITIGAATLVAWLLTHVIPKIIP
Ga0209337_10004032	F000659	GGA	LAKGKEMKTFSQYLEEANSKYIVSINPNDKKWYVMGLVGNNKWMPVSNGFKNKAQAQKWAKSQDKVDIAARGEISGA
Ga0209337_100040320	F006198	GGA	MEVESDIECNNCNATYTMRYESDDIREEDAAFHCAFCGILMEPYYENLDEF
Ga0209337_100040330	F000942	AGGA	MSNPYELRFRLLEMAQGYLQDEYSRKENIAIDAWNFAQEQGDATTRLRTDLQPESYTIEDIKKKATELYEFVENK
Ga0209337_10004035	F050681	GAGG	MKKFKEYLGEAFFKVRIPDVAPTFVEADSASQVKQNMRKILKPEVVKELEIERVTPAKMKQMYRDMAKEKEVE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209337_1000403

Overview

Ecosystem & Geography

Associated Families

Sequences