NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209337_1000403

Scaffold Ga0209337_1000403


Overview

Basic Information
Taxon OID3300025168 Open in IMG/M
Scaffold IDGa0209337_1000403 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-53 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)34663
Total Scaffold Genes46 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)31 (67.39%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Associated Families7

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)49.5666Long. (o)-138.6666Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000659Metagenome / Metatranscriptome952Y
F000942Metagenome / Metatranscriptome826Y
F001334Metagenome / Metatranscriptome720Y
F006198Metagenome / Metatranscriptome379Y
F050681Metagenome145Y
F068119Metagenome125N
F093990Metagenome / Metatranscriptome106N

Sequences

Protein IDFamilyRBSSequence
Ga0209337_100040312F093990N/AMAKNIGLEKIKEKRDTLIEQFNSLQDKKKEMLKQMELVDTDIVTVRGAILLCNEWVTEIEPEPSKEEETNGGQTNN
Ga0209337_100040316F001334GGAMMKFKEYLQINADDSIEQVMNGEWILKSRTTWKATDDKDNTLEIHNDGHDPELKGESWSVHNNTFAPKAFAFFCKQFIKEAKPSEVIHVRTRIFPTT
Ga0209337_100040317F068119GAGGMSEQESFLLLKSEIQALKIKDEYRTKELDALMKKLDNSTSKLNDLSENIGRLLTAQDVNKTNDNEFRDEMKILHTRIGDLQDKMNVMIEKTETRMNTDVNLIYTKLESLERWRWITIGAATLVAWLLTHVIPKIIP
Ga0209337_10004032F000659GGALAKGKEMKTFSQYLEEANSKYIVSINPNDKKWYVMGLVGNNKWMPVSNGFKNKAQAQKWAKSQDKVDIAARGEISGA
Ga0209337_100040320F006198GGAMEVESDIECNNCNATYTMRYESDDIREEDAAFHCAFCGILMEPYYENLDEF
Ga0209337_100040330F000942AGGAMSNPYELRFRLLEMAQGYLQDEYSRKENIAIDAWNFAQEQGDATTRLRTDLQPESYTIEDIKKKATELYEFVENK
Ga0209337_10004035F050681GAGGMKKFKEYLGEAFFKVRIPDVAPTFVEADSASQVKQNMRKILKPEVVKELEIERVTPAKMKQMYRDMAKEKEVE

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