Basic Information | |
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Taxon OID | 3300025168 Open in IMG/M |
Scaffold ID | Ga0209337_1000403 Open in IMG/M |
Source Dataset Name | Marine viral communities from the Pacific Ocean - LP-53 (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 34663 |
Total Scaffold Genes | 46 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 31 (67.39%) |
Novel Protein Genes | 7 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 6 (85.71%) |
Associated Families | 7 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico |
Source Dataset Sampling Location | ||||||||
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Location Name | Pacific Ocean | |||||||
Coordinates | Lat. (o) | 49.5666 | Long. (o) | -138.6666 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F000659 | Metagenome / Metatranscriptome | 952 | Y |
F000942 | Metagenome / Metatranscriptome | 826 | Y |
F001334 | Metagenome / Metatranscriptome | 720 | Y |
F006198 | Metagenome / Metatranscriptome | 379 | Y |
F050681 | Metagenome | 145 | Y |
F068119 | Metagenome | 125 | N |
F093990 | Metagenome / Metatranscriptome | 106 | N |
Protein ID | Family | RBS | Sequence |
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Ga0209337_100040312 | F093990 | N/A | MAKNIGLEKIKEKRDTLIEQFNSLQDKKKEMLKQMELVDTDIVTVRGAILLCNEWVTEIEPEPSKEEETNGGQTNN |
Ga0209337_100040316 | F001334 | GGA | MMKFKEYLQINADDSIEQVMNGEWILKSRTTWKATDDKDNTLEIHNDGHDPELKGESWSVHNNTFAPKAFAFFCKQFIKEAKPSEVIHVRTRIFPTT |
Ga0209337_100040317 | F068119 | GAGG | MSEQESFLLLKSEIQALKIKDEYRTKELDALMKKLDNSTSKLNDLSENIGRLLTAQDVNKTNDNEFRDEMKILHTRIGDLQDKMNVMIEKTETRMNTDVNLIYTKLESLERWRWITIGAATLVAWLLTHVIPKIIP |
Ga0209337_10004032 | F000659 | GGA | LAKGKEMKTFSQYLEEANSKYIVSINPNDKKWYVMGLVGNNKWMPVSNGFKNKAQAQKWAKSQDKVDIAARGEISGA |
Ga0209337_100040320 | F006198 | GGA | MEVESDIECNNCNATYTMRYESDDIREEDAAFHCAFCGILMEPYYENLDEF |
Ga0209337_100040330 | F000942 | AGGA | MSNPYELRFRLLEMAQGYLQDEYSRKENIAIDAWNFAQEQGDATTRLRTDLQPESYTIEDIKKKATELYEFVENK |
Ga0209337_10004035 | F050681 | GAGG | MKKFKEYLGEAFFKVRIPDVAPTFVEADSASQVKQNMRKILKPEVVKELEIERVTPAKMKQMYRDMAKEKEVE |
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