Scaffold Ga0209337_1000330

Overview

Basic Information

• Taxon OID: 3300025168
• Scaffold ID: Ga0209337_1000330
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-53 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 37475
• Total Scaffold Genes: 62
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 34 (54.84%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (37.50%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 49.5666
  • Long. (^o): -138.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006550	Metagenome / Metatranscriptome	370	N
F036977	Metagenome / Metatranscriptome	169	Y
F040142	Metagenome / Metatranscriptome	162	Y
F046073	Metagenome / Metatranscriptome	152	Y
F052263	Metagenome / Metatranscriptome	143	N
F056157	Metagenome / Metatranscriptome	138	N
F098233	Metagenome / Metatranscriptome	104	N
F106115	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209337_100033010	F056157	N/A	MVKKKLGQDDFWAQQIIRAQSGGKDYIFALVRRKYSEDDIEPTGPGQYIGLTEKKSYPKMTDNDPDSTTFGKRIDKPDAEPIGLKMKYEDEFTPENIKKYQSMFGINDFGETIFIYKFKQISIRADKVNEFWTTTQDDAYNKYILKEQVIKIEESKSNTRRRVSKKAG
Ga0209337_100033011	F106115	N/A	MAVATAASIQAHLIGATYPEGTLSKNNIFDYEQYTTRRRYPSCEVITTQPESTVETKKSTDTTIAFEINYYDKNLGLRTDDVSTQREVENVIRARMETMVLQDYKIVLESKTWSRQSVQRDGSHPAYLVSTLKITVRQVNVTVMPVDGVLKFVKVGSTVDNAPGADYTYTNVFDVDLQSGYRDIEEGHTGSNIPKHFAGHIQGRFICNIMVKNADLGATGDKLNKMPLLTTNGERPEIKFVYTNKTADEQAITNTFTAEPESVQMLYKTNDAVVFRLIARLITDIIVT
Ga0209337_100033012	F040142	N/A	MSLGTAGQEVNAKKFQVFIGTGDTNEWALIQNARVLVSHPIFREPTTNGGVVTYTGAPDNSISGTVLFTRDEWTTGTNGFGALLGGATGVEINEVPKKSWNVKFTDVSGSGTVVRLTFANCKLSSVDISKSVEGAVKADIQIVCPGEPTTATS
Ga0209337_100033013	F036977	N/A	MSLDLTKQRLYSIETRVNKYIDQNIVQWATEEILLPGQTDIANSVSQRASEALSLEKTGFMKVDLVWDFRNEEGAPIHFFLEFGTRPHEIRAKGKDNGGADALHWTGPSGESRYAKVVQHPGTQARELISQIKEERIPDLRRRIVDETQNYMELEAI
Ga0209337_100033021	F052263	AGGA	MSKSSSWAKYRMRENRNNQFRPEQIELYKQLRATNANSELLMEYPVTYTNEQDEKRTAIGDIVDVTKKIFYRLNGAVHNSNKQEEKDWEQKIYLEQLGWKVVDIET
Ga0209337_100033028	F098233	AGGA	MRKTTLKPVYEIIFELSKLFDSECAICLKKMKKPKSGFTIHHLVYRKGEKNHKDFISRLEYYKYLKPIVIKFNKKGNMYSKFMFLCNACHHSLDGPRGLNRRKKENVLRLFLAYYSTNT
Ga0209337_100033029	F046073	GGA	MVLFEFTKVKSVLGELGTTNDAKIKHYGEMADNALMGDLINVKNLPNPPVVTIDVLTSTELSDIKSFASQYTVGYFYKFESGDEMTIAEAKENWKNWFNSKFRRPSFKARGGEI
Ga0209337_10003309	F006550	N/A	MAKVYNTKKADYKGMQLWLNPVDKTVYATEGAPTHSFAEAGGYAIYDFNKHFTNQKTAKDNFGNGQYSHDAFVDSEFKSLAEDYVSEVKAGGRQRQAALRSNTNAAVDIVNVWETVLGKQDRTYAGKNLAKEIAVPNLLISIDTATKFSGLTRLDEGQLGQLKELTYTRSNFEAEKYGLKFVIHEEARLKNVHNVLQDSIQVASNKVEQRQSFDVVGLADSSLTAKAAAGAWDTFTANTDHSDNSPLLDLGVAQLLIEGSGVGGKLSRIGMHPLDFAKYMSNTFIRGVASTKPSEVTFEPGTRELPGFPNAGLVLDNAIRQGDVYCVDTEKEPTIALFQGPQRIGSAHDEETGDDKYFIIDYHLAAVIQAETGRQLTGCSTPTNWT