Scaffold Ga0209337_1000174

Overview

Basic Information

• Taxon OID: 3300025168
• Scaffold ID: Ga0209337_1000174
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-53 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 51989
• Total Scaffold Genes: 58
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 46 (79.31%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 49.5666
  • Long. (^o): -138.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001711	Metagenome / Metatranscriptome	648	Y
F040330	Metagenome	162	Y
F045429	Metagenome / Metatranscriptome	153	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209337_100017434	F001711	AGGAG	MAKVIAEKAASEIAVGKQVEIKHTKVMKDAAGKDVTVIDWIDVRPVDEMITQAEAELVTAEALVVALKADIVAYKAIKG
Ga0209337_100017438	F045429	GAGG	MNWLYGMSYLVGICLSLSPLYAQSSLKDLQQIQLLSQDECVIVQVNADWNFKASLDLNGLNNCVWFNASIDDKEYGAIIANEWKIASVPTIIMFEYGKEVKRFEAGLSFNLDKDKIIKAIKDEIDEIQLRKFQ
Ga0209337_100017455	F040330	GGAG	MSKAEKAFELQERIGRLIDKLDALGFEFMYFNFTSSIRRKRK