NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209337_1000124

Scaffold Ga0209337_1000124


Overview

Basic Information
Taxon OID3300025168 Open in IMG/M
Scaffold IDGa0209337_1000124 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-53 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)62773
Total Scaffold Genes110 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)66 (60.00%)
Novel Protein Genes16 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (31.25%)
Associated Families16

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)49.5666Long. (o)-138.6666Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001066Metagenome / Metatranscriptome788Y
F004880Metagenome / Metatranscriptome420Y
F007003Metagenome / Metatranscriptome360Y
F016619Metagenome / Metatranscriptome246Y
F034394Metagenome175Y
F040325Metagenome / Metatranscriptome162Y
F042629Metagenome158Y
F047713Metagenome149N
F051547Metagenome144N
F056888Metagenome / Metatranscriptome137N
F060433Metagenome133Y
F071758Metagenome / Metatranscriptome122Y
F074009Metagenome120N
F081895Metagenome / Metatranscriptome114Y
F087902Metagenome110N
F092887Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0209337_1000124104F071758N/AMSDHTCKRCAIPKYGYTDGTHSIYLCYKCGRYEGISGGDEDFVNNINENPMILLHMIKAKTLIPIS
Ga0209337_1000124105F060433N/AMELFEPLLIASLLGIGGALFGFFRKMSSTQKDLCETVARLQKTLIILAKAVDRQSNRLHPEEANSELDDLVKELLRDK
Ga0209337_1000124106F051547AGCAGMIDPLLIATISVIGGAVLNTVRGFLGSDETTYDIKKFFGAVIIAVFAGIAVAQTLSLAGLGIVETVLIGLSIGFSVDYAVSKAKKTA
Ga0209337_1000124110F016619N/AMAITIAQNADHKSLTGKTLSIQSELTSKLKSTIVDVTYGGSDTYATNGNTVDLSLGGRISTVIGAEILHCNKGLLLQYAPAAAGAAATGKIKAFGHTPTSSTATVVALEELDASDTAVNSMTIRIRVIGF
Ga0209337_100012418F004880GGAGMSQEYYDHLNAGEKYTCDKCQTATLGAHEYDQYIRFQYHYCDLCWNYIHLKKGTCDSCGSSMTNRSENKNTSVLCSCGNEVELKW
Ga0209337_10001242F087902N/AMTYSNHNVKDVSSDGAVKAGHGVIVSVHVVKAGASGDKVVFHNGDANSDPAEFTVYGEGIQNIQDIMRRFEDGIFAEVTGTTAKYLVVFK
Ga0209337_100012425F001066N/AMDKNDDIFKIKPIGNTDIVVEDKRKTISPFNSAKHFKEANIPALCDQCVYKSVEEGGNGKCPKYEKGAVCGIRKDFISFINELDTRNPEDLKNMIDMVAKLTFENVLMTLTQAKFDGNVPDRNSKSEINTLLNIVKSMNDLNSKITITEKKEFSKEGDIESIFRQIKAQKKDG
Ga0209337_10001243F034394N/AMVTTTTYCSVNDIIDFLRVPITSTTTPNKEMVRKIIARKEEEFDRRVGHTWKTKKITREVHDLPLLYTFGWGTPLFLQHRNIYQLDSSQGDKIEIWKGESDSWENIVGQDQWYHGEYERGTLHLRGYLFTILRKNRVRVTYRYGGENFAGDSEIPLDVADAVIKMASIEIMNTSFRMDELPSGGSVSPSESKKYWQEDIETCINNRREVFVIP
Ga0209337_100012432F040325N/AMARRKIGNSHTTICVSWEDKELFRKFAKFVKTTRTGKLYESDAVLFNKMLLFFKESNAVGEISNTTYPTKNQEPTQLR
Ga0209337_100012433F007003N/AMIHYFTKNIDEKKYNDIIQRTIMINGNDGTNNSGYKAWQNFEENWTLNIIPVTDQEDFKVYYKHLNVETSDGIAWGVTGIKVIYMFVNDVKNPFIIRQNIMPLGHELLHAIYQDAVGTFHITRKYDAPEGKANTRGAAATVIVHDNWYGTKKTIKIWIRWGMIWLPITIPFIPVKEAKKQYAI
Ga0209337_100012434F074009N/AMGTKITGKYAGNCKICGSDWRVGEQIFYQKDPKAICVDKECFEEQGGKFTPYKQQGTLTNSTGGWGKTPIITKLPDVEVSDEVKKITEYWDQFFLVAHHKTKAIYPQEDVNGDRFGQIRSKMMDQFMGLTNLIKE
Ga0209337_100012435F056888N/AMNVSEVLDIDGSVDRSKKLVAGDKITIQSFKIKNVDEVGAEVVEIGTTEGLRHSFGKTVIGQAKSEYWKDVVAKCVDKDAADGLDAYVVEKEAEKTGRMMLALSMFPPKN
Ga0209337_100012440F092887GAGGVVISKPVRRNKKTSKSVVIIEPSRKVSTHDRVINVLKEYKRGLPLTELHYKTQVASMGNLHHTIKFMVRAGELEQESCPHCNSTELYKLI
Ga0209337_100012446F047713AGGAGMEIIGQGEVAALKIIKDMFGNSCEYLTQVKLSDMITPEYLETLSDRQLKETIDIVVDTGFQYLAIRVQDKHHASARMATIDNIQKNMLEWNGWKVIDIWYYECKELWKDRVNEKSRLELELAIKESSVD
Ga0209337_10001245F042629N/AMTITTYDAVDDIISLIKSKWSNLRPPTISKVWDKRTVGFIDDRSDQVILSPKGEDIQYFGLGGSAFWHNQIIEMEIRTYQDIDRHNSVVKEIVKIIKDNITGTTYTDLRVIASFSKNYAYRNMYSYVVTISYRKADPS
Ga0209337_100012450F081895GAGLYDKLKVFKRIKKLELILFTPINLETDEELEERHKKGVLMHYLRALEKLMVDQK
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Institute for Fundamental Biomedical Research
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