Scaffold Ga0209337_1000097

Overview

Basic Information

• Taxon OID: 3300025168
• Scaffold ID: Ga0209337_1000097
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-53 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 72632
• Total Scaffold Genes: 107
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 92 (85.98%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (100.00%)
• Associated Families: 7

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 49.5666
  • Long. (^o): -138.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004771	Metagenome	424	Y
F018267	Metagenome	236	Y
F019158	Metagenome	231	Y
F025414	Metagenome	202	Y
F053548	Metagenome	141	Y
F086310	Metagenome	111	Y
F101902	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209337_1000097102	F025414	AGGA	MQVGSLVRETIDGNIGVILAWENDGWLVNFPKHGMVFHMMPRLLEVISASR
Ga0209337_1000097103	F086310	GGAGG	VQVGDLVKHFLTEQVGIVLTVVVAKPRRSIGSVHVIWTTQGDSLFGPGNKEWCCPESLEHLTTA
Ga0209337_1000097106	F019158	GAG	MKMTIVIDSSDREGIHDALKMVRIMHTKYSGNATAHKESFSKIEFIKMLRKFMKESIEHLDDPDSGQVRDMTDMPNLRNAKRFADRIFTGMR
Ga0209337_1000097107	F004771	GGA	MKVGDLVRMKTHNTGLVGIVMGRYPKYTDTGPIQIGIKWFKGSGKTDWEPESWLE
Ga0209337_100009789	F101902	GAGG	VKVGNLVKRRDDHRHHGIVIEVAPIETRIDHGDNVCRVEWSDGEVSFEFIKMLEVLSEGR
Ga0209337_100009791	F018267	AGG	VKVGDLISFKPKSFGDDDWSNPGIVLDSYEDDDRQAGGWKDLIWIVWIDGGKYMINERNDDVTYLTSS
Ga0209337_100009795	F053548	GAG	MKDSGAPSIGDLVIALYDELRDISCVGLVMETKGIECKIQWSSESNPIGWWPRSKLKVISAV