Scaffold Ga0209337

Basic Information
Taxon OID	3300025168 Open in IMG/M
Scaffold ID	Ga0209337_1000093 Open in IMG/M
Source Dataset Name	Marine viral communities from the Pacific Ocean - LP-53 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300025168 Open in IMG/M

Scaffold ID

Ga0209337_1000093 Open in IMG/M

Source Dataset Name

Marine viral communities from the Pacific Ocean - LP-53 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	75055
Total Scaffold Genes	88 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	23 (26.14%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (16.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

75055

Total Scaffold Genes

88 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

23 (26.14%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (16.67%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Archaea	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Archaea

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	49.5666	Long. (^o)	-138.6666	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Pacific Ocean

Coordinates

Lat. (^o)

49.5666

Long. (^o)

-138.6666

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025852	Metagenome / Metatranscriptome	200	Y
F028316	Metagenome / Metatranscriptome	192	Y
F033590	Metagenome / Metatranscriptome	177	Y
F033600	Metagenome / Metatranscriptome	177	Y
F056154	Metagenome	138	Y
F105495	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209337_100009322	F025852	N/A	MDIITYIDSIGRTCFGELESRTKNSIKVKSPAMIMVTPNDAANMKVDVMPLFFTEFSNGKPPVFIYKDPQFVEVEIEISEKILQHYYAKINTTEEPNPAGVTEALEEEVPEVTLFEEK
Ga0209337_100009335	F028316	N/A	VKKNKPKNFDNLLKTSINAADDMINGNEEDLSMINDYLSEYLKSFCLLGYDTKGESVVILAGKTAQDYDAIETLLRRISNVDFFNNIQEEKSKSNE
Ga0209337_100009339	F105495	AGG	MHVPTQPRAIVAPSGETARPVIKNVRVGDEIRVEAHYTDPKTGQFITKIPVSVTKVDD
Ga0209337_100009343	F033590	N/A	MGKFKNKFLSLLKEDEVPAIDAGPEDDAQSFAGSLDKPENAEDFEDVQDNQPNTAHELEQLQEWVGNIDEVIEYLNGGTDSVLGYLRTDNKTGTIFDDVSDATKSEILDVCERLASLNQIFKNLYIEKHK
Ga0209337_100009344	F033600	N/A	MMKGILFEDLYMYTNKYWKDVKSRHVRPTTKTLADIAKASPETYNKVKATLVPFPGDHAVEQLGSAFKSISDATNLLNQLFENPTVTSDEKTQVSVNNKLQKIQDLIKSVADDLDHDGTNNS
Ga0209337_10000935	F056154	N/A	MQEYDKLCEKYMIRRIRSFYPRKFDLSPEFIEAFKLEYSRLVESGQNKRTLFERMRKALTFHL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209337_1000093

Overview

Ecosystem & Geography

Associated Families

Sequences