Scaffold Ga0209337_1000073

Overview

Basic Information

• Taxon OID: 3300025168
• Scaffold ID: Ga0209337_1000073
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-53 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 81723
• Total Scaffold Genes: 100
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 75 (75.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 49.5666
  • Long. (^o): -138.6666

Associated Families

Family	Category	Number of Sequences	3D Structure?
F054844	Metagenome	139	Y
F077952	Metagenome	117	Y
F094548	Metagenome	106	Y
F099989	Metagenome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209337_100007312	F077952	AGGAG	MKFYVSRTHVFINDSGKVDGYETVLTKPDSLKPTREMLRRMKALGITDLHVCEHPANSRRWGQLDRAQTKRTKTRAMTMADVAADLAELEKEAAEKEANNS
Ga0209337_10000732	F094548	AGGAG	MIKVGNMVQSKYVLSSGKEGNLGLVMQLRNTEEEAFGLAHVYYPKTRTFGWVVVKDMKVV
Ga0209337_10000733	F054844	AGGTGG	MRAGDLVKWRGSVGLVIGPCKKRWAAPDDVWVKWTDKTKPAIEAGRLLELLNANR
Ga0209337_10000734	F099989	GGAG	MQIGDLVKVIYDGTMGLVVRVEGGPWNTPWVWLCTGESFRSDKLELVNAGR