Scaffold Ga0209337

Basic Information
Taxon OID	3300025168 Open in IMG/M
Scaffold ID	Ga0209337_1000048 Open in IMG/M
Source Dataset Name	Marine viral communities from the Pacific Ocean - LP-53 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300025168 Open in IMG/M

Scaffold ID

Ga0209337_1000048 Open in IMG/M

Source Dataset Name

Marine viral communities from the Pacific Ocean - LP-53 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	106298
Total Scaffold Genes	122 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	101 (82.79%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (100.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

106298

Total Scaffold Genes

122 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

101 (82.79%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (100.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	49.5666	Long. (^o)	-138.6666	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Pacific Ocean

Coordinates

Lat. (^o)

49.5666

Long. (^o)

-138.6666

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F004771	Metagenome	424	Y
F009562	Metagenome / Metatranscriptome	316	Y
F010950	Metagenome	297	Y
F037424	Metagenome	168	Y
F057769	Metagenome / Metatranscriptome	136	Y
F058454	Metagenome	135	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209337_1000048107	F057769	AGGAG	MIEVGSMVTNVGFIQGRNNSNHGVVISLMAGGKIARVFWASTQKSGFCSVVDLQVIA
Ga0209337_1000048108	F010950	AGG	MMKIWVVRQTCAHSNDTYLSTHITEKGALITAIEAVRADMADGLDGDELEDMRPGMPHDFDEDLMKYSSDHLRGIVQDWWEYAWEIDEYQQYQIHQTQVTA
Ga0209337_1000048110	F058454	GAGG	MKVGDLVTYTFQGRRWQEGLSVDVGIVVETGKWTGNADVKVLWSGNSVAVTQKGDHLRLLTPS
Ga0209337_1000048112	F009562	AGGAG	MLTLPLIRTDDDSTLTPIERTAVACEQVITALLMAASMGDPRLNDQEREVLTTLSVATIVPAEA
Ga0209337_1000048120	F037424	AGGA	MSYNGTVRCSYCYTTGHNKRKCSDYTAMVLRRYNDNLGFAAQVDEARPDHYLQQAERYRLVYMKRTKIDPATGEKVKNKTAKAERMKKVTCGYCSQRGHTRRVCGVVERDKLVFIEESRRVRAGVLEDARETGIGVGSMIPIRTRGYNADNEWGTHTTLRYVKSVDWNTVTANRAGLWVYHVDARKLGAANQGRWTSRDKIVSLRENFNEACSHAELQNHSEPTASLIPSLDPAAGWLDCEPSTIDVAAHFPTKGNKYEKQRGHNYTWPRGVTAEVIRDLGLEEHYEVS
Ga0209337_1000048122	F004771	GGA	MKVGDLVRMKTHNTGLVGIVMGRYPKYTDTGPIQIGIKWFKGSGKTDWEPESWLEVVSES

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209337_1000048

Overview

Ecosystem & Geography

Associated Families

Sequences