Scaffold Ga0209642_10409747

Overview

Basic Information

• Taxon OID: 3300025167
• Scaffold ID: Ga0209642_10409747
• Source Dataset Name: Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 19_2 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 758
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → environmental samples → uncultured Rubrobacteraceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Unclassified → Soil → Soil Microbial Communities From Rifle, Colorado, Usa

Source Dataset Sampling Location

• Location Name: Rifle, Colorado, United States
• Coordinates
  • Lat. (^o): 39.53
  • Long. (^o): -107.78

Associated Families

Family	Category	Number of Sequences	3D Structure?
F067412	Metagenome / Metatranscriptome	125	Y
F085141	Metagenome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209642_104097471	F085141	AGGAGG	MGERIRTPLDAALIVASALDMYKEQYPLVGEEIEEIQSAGSVPRIRLKFKTGETFVVDITREPRAHRNPV
Ga0209642_104097472	F067412	GGAG	MDDKEKYMRWLETMWDLHNRISREEKRKTEVLEVFEGLARLSRRRVEVSYSPPWEPSR