Scaffold Ga0209108_10178906

Overview

Basic Information

• Taxon OID: 3300025165
• Scaffold ID: Ga0209108_10178906
• Source Dataset Name: Soil microbial communities from Rifle, Colorado, USA - sediment 10ft 1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1106
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Rifle, Colorado, Usa

Source Dataset Sampling Location

• Location Name: Rifle, Colorado, United States
• Coordinates
  • Lat. (^o): 39.53
  • Long. (^o): -107.78

Associated Families

Family	Category	Number of Sequences	3D Structure?
F037483	Metagenome / Metatranscriptome	168	Y
F084387	Metagenome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209108_101789062	F037483	AGGAG	MKTRVIWTFSIALLLGLTSIANAQLKAGSPEETAYTKIDAEKNSDAKLAMLLDYEKQFPTVSPKVMANIYLMAMVIYSEKDDKAKIAEYGDKAIAKDPENISALLAVSRNYAAGRTNLEKAVEYAEKVKEIITAMRTAPVPTGTTEAQYKQWLDANAQSADQYSSYAKTLLTTLR
Ga0209108_101789063	F084387	N/A	MSGEAVDNLQKILDTTLGSFLDLVQCDAGSVYTARKGPAGDQVLTFEAMITRSINLRGVPDHLRSLRFKIDDSTVVGK