Scaffold Ga0209410_1003664

Overview

Basic Information

• Taxon OID: 3300025163
• Scaffold ID: Ga0209410_1003664
• Source Dataset Name: Marine hydrothermal vent microbial communities from Guaymas Basin, Gulf of California to study Microbial Dark Matter (Phase II) - Marker 14 Mat core 4571-4 3-6 cm metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7356
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (94.44%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Hydrothermal Vent → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Mexico: Guaymas Basin, Gulf of California
• Coordinates
  • Lat. (^o): 27.0078
  • Long. (^o): -111.4071
  • Depth (m): 2000

Associated Families

Family	Category	Number of Sequences	3D Structure?
F035145	Metagenome	172	Y
F050065	Metagenome	145	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209410_100366410	F035145	AGGAG	MLEKLSEFMRRDYNLKTIITEECCDLVRVEVICLTARTSFPLLSLTYNRHTDNFILTVERKFITQPSTLKALIEALESVKEVMLNGMEQIER
Ga0209410_10036649	F050065	GGA	MNMLKATASMEQIMLTIAYLKGLLRDAKRRGDKELVRYVGEIIGVYEARLQSQNNNN