Scaffold Ga0209083_1016372

Overview

Basic Information

• Taxon OID: 3300025162
• Scaffold ID: Ga0209083_1016372
• Source Dataset Name: Freshwater microbial communities from Finland to study Microbial Dark Matter (Phase II) - AM7a DNA metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3913
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Finland: Lake Alinen Mustajarvi
• Coordinates
  • Lat. (^o): 61.2
  • Long. (^o): 25.1
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007166	Metagenome / Metatranscriptome	356	Y
F054520	Metagenome	139	N
F069612	Metagenome	123	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209083_101637211	F069612	AGGA	MSCKICKYFQFNQNDMMGACKLYPTVVNKLPQDWCGQEIPKEYEPTIKDWEKADSITINVKPVETIYDIHTDAVKPKRGRKNAGTKE
Ga0209083_10163723	F054520	AGGGGG	VLEKTIIAATGLGYLMVGVLQLRKGAISNAIIWLGYSFSQVGLWMALK
Ga0209083_10163727	F007166	GGA	MDELAQVMTEMEQRLEIALDNMEYGTELSQDDVDVIRAACGKPNNKRNNLLQSVFDDFGNVFGGNHV