Scaffold Ga0209320_10020364

Overview

Basic Information

• Taxon OID: 3300025155
• Scaffold ID: Ga0209320_10020364
• Source Dataset Name: Soil microbial communities from Rifle, Colorado, USA - sediment 13ft 4
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3232
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Rifle, Colorado, Usa

Source Dataset Sampling Location

• Location Name: Rifle, Colorado, United States
• Coordinates
  • Lat. (^o): 39.53
  • Long. (^o): -107.78

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008101	Metagenome / Metatranscriptome	339	Y
F072863	Metagenome / Metatranscriptome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209320_100203642	F072863	GAGG	MFDDLNYAAILRPVGQMLESLRIDSFAVRPDEDSFVIRDKTRNRVQLTPRERAFLAELHWSHGADLDKSDARRLAAGVFEWHVTRDDVERFEREGREKRRAGDQTPDTNAVSQVLRVIGSILDQKGGRMVSVLKDEQVVTLEYELPGGRVAAEEYNVPTLYDFWVRMYMKRAARNGEARLTA
Ga0209320_100203643	F008101	GAGG	MSSSLNFSQLLRPVGQMLEPLQIESFSLKVEDSGVSVHAQKREEAPAQTPGVSLRVTWQIFRRKKTEREHDPQPSSGALEVYYTRDDIARMDTEARSRRQGAGGKPEAHTLSQILRAVGAFVDQKQGRLLGVSMDGQDISIEYESALKRNLAEKFTVASLYDFWVKMYLRRRDRS