Scaffold Ga0209320_10007862

Overview

Basic Information

• Taxon OID: 3300025155
• Scaffold ID: Ga0209320_10007862
• Source Dataset Name: Soil microbial communities from Rifle, Colorado, USA - sediment 13ft 4
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5224
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Rifle, Colorado, Usa

Source Dataset Sampling Location

• Location Name: Rifle, Colorado, United States
• Coordinates
  • Lat. (^o): 39.53
  • Long. (^o): -107.78

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013841	Metagenome	268	Y
F018096	Metagenome / Metatranscriptome	237	Y
F033376	Metagenome	177	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209320_100078622	F033376	GGAG	MKSDIEKKIEARVAAAFGDIIPAPESKAGQEILKGAQELVRAVWVGKIYAALPSDKTIISEYFLDAELEQFLNEAVEECHRQICLIAQRAKEEFS
Ga0209320_100078623	F018096	GGA	MKIIMPAADRKPCVCGASLVVSRTSSKGHLTEVWLCASHCGARGLTYEGALRRKVRLDLLSWGDLRRNAQSLIAAYADEEDTCLLQ
Ga0209320_100078624	F013841	GGGGG	MKLLLSTLFKKVPVRTTKQRATLCKRCGARIYSLSYLKAHLEAHDRKTH