Scaffold Ga0209645_1055387

Overview

Basic Information

• Taxon OID: 3300025151
• Scaffold ID: Ga0209645_1055387
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_6_30 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1378
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -104.89

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016691	Metagenome / Metatranscriptome	245	Y
F079339	Metagenome / Metatranscriptome	116	Y
F082763	Metagenome / Metatranscriptome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209645_10553872	F079339	N/A	MSYLDYRKKVYTELLSKIDKNKDIKSLRKHIVKEINHIEYLKSYE
Ga0209645_10553875	F082763	AGAAG	MTAYLEGFVTKMIEQYIPEGKDAIAHVDCREFMYEYIFQLIEEDKIPRKLSAIKYLCMNYRQFVYTNLSMLN
Ga0209645_10553876	F016691	N/A	LSKIPKKGDYYTIREIIDYPKLGRTGVRLEEISNPLIEMNGGMGEPTFSILRFRELEVPPPLELEIREALDNDLGLEIIEEDDSLLRRIRN