Scaffold Ga0209645_1050612

Overview

Basic Information

• Taxon OID: 3300025151
• Scaffold ID: Ga0209645_1050612
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_6_30 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1458
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -104.89

Associated Families

Family	Category	Number of Sequences	3D Structure?
F045677	Metagenome	152	N
F048238	Metagenome	148	Y
F056529	Metagenome	137	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209645_10506121	F045677	N/A	MKKVETLLPEELIERLSAEAKEKGIHRSDLIRERLSQPPNHFGLTTSDFHKAVTKVRRRSSYGLDRQQAESLVATVFNELFSPSDGD
Ga0209645_10506122	F048238	N/A	MGTKNVHLHYCQIADEHCPLAITRFTTFDLDDKPLAVEQVTYESNMDYMERQVINALRCNVEVSILTATPIHEFKRLHHIFNSDK
Ga0209645_10506124	F056529	GAG	MATKHGNRVYIQVLLEPFRGELFMREANAQGIKPSALIRQLVYNYLAENTDEETYCEALVNDKQKWQDAVDARLEGRAKNRRSRTIQLQQDIDSSN