Scaffold Ga0209645_1045813

Overview

Basic Information

• Taxon OID: 3300025151
• Scaffold ID: Ga0209645_1045813
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_6_30 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1552
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -104.89

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008724	Metagenome / Metatranscriptome	329	Y
F029404	Metagenome	188	N
F066135	Metagenome	127	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209645_10458132	F008724	GGAG	MSEMKNFMMDVEEFCDGYSYGGMKDFTVGEVVEDVEMYFKSNEATKYAKRYLTEKLGEE
Ga0209645_10458135	F029404	GGAGG	MTTIDFIEVELGGDKWKISWDHNRRKKVTTTGEKAGLMYTIYSLTELTPAQAYDIATTQLEWLKRDQVYVI
Ga0209645_10458136	F066135	GGAG	MNGLRIHDVNNIKVKSVDFDEFKTIVVTVTDQANKDFELTLFTDKGFTPNLEVEYDND