Scaffold Ga0209645_1043746

Overview

Basic Information

• Taxon OID: 3300025151
• Scaffold ID: Ga0209645_1043746
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_6_30 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1598
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -104.89

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028349	Metagenome / Metatranscriptome	192	Y
F058518	Metagenome	135	Y
F081883	Metagenome	114	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209645_10437461	F058518	N/A	GQKMQYKDIIISEDDLECDETDTIYKAIKNHILDVGIATPTSLTGFTWRLDVRLRTDK
Ga0209645_10437462	F081883	AGGA	MTPRIEKIYNLIYYSDFDEYEIKQLAIGLLGMTINDLAWQQTSNTISTYKLDDEVELDFDIGDNLR
Ga0209645_10437467	F028349	GGAG	MKVRTYHKNGKAVQFLGYSDIDASNAAKVVMGEVGSVGYFKPRLGTDECIYDWVYVKEITDEDLKRAYNEL