Scaffold Ga0209645_1036248

Overview

Basic Information

• Taxon OID: 3300025151
• Scaffold ID: Ga0209645_1036248
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_6_30 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1792
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -104.89

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013822	Metagenome	268	Y
F019393	Metagenome	230	Y
F083382	Metagenome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209645_10362484	F013822	AGTAGG	MGMTEKELLRKNVKELQLQLRDAHIRIKELNEKCDELRKRLGLEKEFTTADGWAMPVENPDATHIKERK
Ga0209645_10362486	F019393	GGAG	MYSELKTYTSMSGFIQAHEGLWHMLDAKYKKLDKETVLIDNTKWKLVKGNMTCLTK
Ga0209645_10362487	F083382	GGA	MPDKIKDRDTLVSVDDAGDVAKKEYESYIKRQEKDVSDDLDNQYYSEGEQYD