Scaffold Ga0209645_1035193

Overview

Basic Information

• Taxon OID: 3300025151
• Scaffold ID: Ga0209645_1035193
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_6_30 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1822
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -104.89

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030052	Metagenome	186	Y
F039092	Metagenome	164	Y
F048927	Metagenome	147	Y
F059877	Metagenome	133	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209645_10351931	F048927	N/A	SNFKIDSSTNIIKLNNQTYIPFQLHQLPKYYNEIPLSEQFNLKGYCYINLTSLKSHNKDIHTLNRDLDYTQRR
Ga0209645_10351935	F030052	N/A	MDNNNDMKIKLKELEALLVSHDWYYMMSDDNYWYKQGRKSFELITKIMLELKDGGYFTEANNLYDKYSK
Ga0209645_10351936	F039092	N/A	MTFTFKNIGKTYKVSDDDKVEVTHNHDAIVSVCGEYYKNKYTGEWLSELEAEQAMIDKYEEDESNKYY
Ga0209645_10351937	F059877	N/A	MTKSKFIASAVAATLALTSCEKTDYDVQFDRDTHVKIMSDNSVSTYAVSTCTGNDTSFVVDFGVAMCINVANLPGINDVRYDEYEFYAMLDGRKVKGFQNLKDQISDRAQGLIDGNINVQLSGHTDLAVYLLHENMYKAQFFVENGDGQ