Scaffold Ga0209645_1034205

Overview

Basic Information

• Taxon OID: 3300025151
• Scaffold ID: Ga0209645_1034205
• Source Dataset Name: Marine viral communities from the Pacific Ocean - ETNP_6_30 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1854
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Siphoviridae → unclassified Siphoviridae → Cyanophage MED4-117 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.92
  • Long. (^o): -104.89

Associated Families

Family	Category	Number of Sequences	3D Structure?
F048928	Metagenome	147	Y
F085581	Metagenome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209645_10342053	F085581	AGGA	MPKILRKVSNPELPLNVAVFQDHLALGLDCFELDWFDFAPMTCKHNEYGDGIAFSQYDKYHIDHCKAEYCLIVSDGGLHMPDKKLMPFSNEQPPTKMALLVLSAMVIQEPLNFKCPECD
Ga0209645_10342054	F048928	N/A	MAYENLFTGRLVLFNNTDKKSAKSPDLGGNIEFTLSDAMAFAEWVTGQEGEDNYAGEKVVKIPVSAWHKESRNGTPFVSGAISVAKTEKEELPF